The object of Seed stratification is to break the natural dormancy of the plant to aid in germination. It is extremely critical to know what seeds require to break that dormancy before beginning any seed stratification. Otherwise you may do more harm than good. Some seeds require warm treatment, while others require a cold treatment . Other seeds require a combination of both warm and cold treatments followed by a warm treatment.
In the case of native milkweed, they require the cold treatment which lasts generally a minimum of one month. I like the coffee filters for cold treatments, soak them in water, lay 5-8 seeds in each filter, secure by folding the filter over them, put in individual plastic sandwich bags, label , and put in container in the fridge for minimum of 1 month. ,